The new readGenotype prints "Original size: 1 and read-size is 512".
My species are the same, I only have one subpopulation. Everything is
pretty simple.
No rush, I totally understand about GECCO's deadline.
A little quote from my parameter file:
pop = ec.Population
pop.subpops = 1
pop.subpop.0 = ec.Subpopulation
pop.subpop.0.species = ec.gp.GPSpecies
pop.subpop.0.species.ind = ec.gp.GPIndividual
pop.subpop.0.species.ind.numtrees = 1
pop.subpop.0.species.ind.tree.0 = ec.gp.GPTree
pop.subpop.0.species.ind.tree.0.tc = tc0
//Brad
On Jan 24, 2008, at 11:39 PM, Sean Luke wrote:
> Interesting... the same parameter file you say? That'd be odd. As
> it turns out, there are *two* reasons for this error. Either the
> number of trees being read from the file differs from the number of
> trees in the original individual, *or* the tree array in the
> original individual is null. This second case is unlikely but you
> can test it by changing readGenotype in GPIndividual.java to be
> something like:
>
> /** Overridden for the GPIndividual genotype. */
> public void readGenotype(final EvolutionState state,
> final DataInput dataInput) throws
> IOException
> {
> int treelength = dataInput.readInt();
> if (trees == null)
> state.output.fatal("Hmmm... trees are null in readGenotype
> (EvolutionState, DataInput).");
> if (treelength != trees.length) // wrong size!
> state.output.fatal("Number of trees differ in
> GPIndividual when reading from readGenotype(EvolutionState,
> DataInput).\n" +
> "Original size: " + trees.length + " and read-size is " +
> treelength);
> for(int x=0;x<trees.length;x++)
> trees[x].readTree(state,dataInput);
> }
>
> This would also tell us how many trees you have coming in and
> currently in the individual.
>
> Some other oddities. Though you're setting
> gp.individual.numtrees=1, this only gets checked (and used) if you
> don't have the local parameter set, namely pop.subpop.
> 0.species.ind.numtrees=1 What do you have set in the local
> parameter? Also, how many subpopulations do you have? Do they
> have different species? I'm grasping at straws here but won't be
> able to really look at it until after the GECCO deadline.
>
> Sean
>
> On Jan 24, 2008, at 10:28 PM, Bradford Barr wrote:
>
>> Hey List,
>>
>> I'm having an issue with an Island model. I keep getting this error:
>>
>> FATAL ERROR:
>> Number of trees differ in GPIndividual when reading from
>> readGenotype(EvolutionState, DataInput).
>>
>> But both Islands (I'm only using two so I can figure out what's
>> going on) are using the same parameter file, and I have a command
>> line parameter saying gp.individual.numtrees=1 for both runs just
>> to double check.
>>
>> I'm stumped. Can anyone offer any insight?
>>
>> Thanks in advance,
>> Brad Barr
